AAWSAP DIRD, Quantum Computing and Utilizing Organic Molecules in Automation Technology, December 2010

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103. Winfree, E., Liu, F., Wenzler, L., Seeman, N.C.: Design and self-assembly of two-dimensional DNA crystals, Nature, Vol. 394, pp.539-544, 1998.

104. Several papers related to error suppression of DNA tiles are presented in: Preliminary Proceedings of Tenth International Meeting on DNA Computing (Editors. C. Ferretti, et. al), Milan, 2004.

105. Somei, K., Kaneda, S., Fujii, T., and S. Murata, "A microfluidic device for DNA tile self-assembly," DNA Computing 11 (A. Carbone and N.A. Pierce Eds.), LNCS 3892, Springer-Verlag Berlin Heidelberg, pp. 325-335, 2006.

106. Somei, K., Kaneda, S., Fujii, T., and S. Murata, "A microfluidic device for DNA tile self-assembly," DNA Computing 11 (A. Carbone and N.A. Pierce Eds.), LNCS 3892, Springer-Verlag Berlin Heidelberg, pp. 325-335, 2006.

107. Huang, M.C., Ye, H., Kuan, Y.K., Li, M.H. and Ying, J.Y. (2009) Integrated two-step gene synthesis in a microfluidic device. Lab. Chip, 9, 276-285.

108. Mueller, S., Coleman, J.R. and Wimmer, E. (2009) Putting synthesis into biology: a viral view of genetic engineering through de novo gene and genome synthesis. Chem. Biol., 16, 337-347.

109. Lee CC, Snyder TM, Quake SR. A microfluidic oligonucleotide synthesizer. Nucleic Acids Res. 2010 May;38(8):2514-21. Epub 2010 Feb 21.

110. LaBean T.H., Yan H., Kopatsch J., Liu F., Winfree E, Reif J.H., and Seeman N.C. Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes. Journal of the American Chemical Society, 122:1848-1860, 2000.

111. Yan H, Zhang X, Shen Z, Seeman NC. A robust DNA mechanical device controlled by hybridization topology. Nature. 2002 Jan 3;415(6867):62-5.

112. Rothemund PW. Folding DNA to create nanoscale shapes and patterns. Nature. 2006 Mar 16;440(7082):297-302.

113. Shih W.M., Quispe J.D., and Joyce G.F. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature, 427(6453):618-621, 2004.

114. Rothemund P.W.K., Scaffolded DNA origami: From generalized multicrossovers to polygonal networks Nanotechnology: Science and Computation, pp 3-21 (2006).

115. Seelig, G., Soloveichi, D., Zhang, D.Y. and Winfree, E., "Enzyme-Free Nucleic Acid Logic Circuits," Science, 314, pp. 1585-1588, 2006.

116. Adleman, L.: Molecular Computation of Solutions to Combinatorial Problems, Science, Vol.266, pp.1021-1024, 1994.

117. N. C. Seeman, C. D. Mao, T. LaBean, and J. H. Reif, "XOR operations by algorithmic assembly of DNA tiles," Biophys. J., pt. 2, vol. 80, no. 1, p. 45, Jan. 2001.

118. Stojanovic MN, Stefanovic D. Deoxyribozyme-based half-adder. Journal of the American Chemical Society. 2003 Jun;125(22):6673-6.

119. Stojanovic, M.N., Nikic, D.B. and Stefanovic, D. Implicit OR tiling of deoxyribozymes: construction of molecular scale OR, NAND and four input logic gates. J. Serb. Chem Soc. 68, 321-326 (2003).

120. Stojanovic MN, Stefanovic D. A deoxyribozyme-based molecular automaton. Nat Biotechnol. 2003 Sep;21(9):1069-74.

121. Stojanovic MN, Mitchell TE, Stefanovic D. Deoxyribozyme-based logic gates. Journal of the American Chemical Society. 2002 Apr;124(14):3555-61.

122. Macdonald J, Li Y, Sutovic M, Lederman H, Pendri K, Lu WH, et al. Medium scale integration of molecular logic gates in an automaton. Nano Letters. 2006 Nov;6(11):2598-603.

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